The FT Squad, with their newest recruitsWubbzy, Daizy, Widget and Walden, travels to the deep jungles of India where they meet a boy named Mowgli who was raised by wolves. They find it very cute, but soon realize that Mowgli's life is at stake when Shere Khan the tiger, one of the jungle's most feared predators is on the hunt for Mowgli. Now with Bagheera, the panther who took the man cub to the wolf pack, the FT Squad most escort the boy to the nearest Man Village to assure his safety. They also meet Baloo the bear, who intends on protecting Mowgli, something that causes Kyle and most of the squad to forget about the mission and just let Mowgli stay with Baloo. But soon they realize that drastic action must be done and Mowgli must go to the Man Village, despite the man cub's complaints. Also along the way, the squad encounters Colonel Hathi, an Indian elephant who for some reason expresses interest in the FT Squad's work and supports them.
- The reason why Kyle starts forgetting about taking Mowgli to the Man Village is because he assumes Baloo will do a good job in protecting Mowgli and therefore trusts him. Sadly, he later decides that it's best for Mowgli to go back to the village when Baloo learns about Shere Khan from Bagheera, but nonetheless, Kyle still trusts Baloo,
- The FT Squad gets support from Colonel Hathi. They will meet him again in The FT Squad Meets Mulan where they learn that he is another Future Time Travel authority, like Commander Atom.
- Shere Khan becomes one of the squad's most feared enemies after this adventure.
- Kaa the snake takes a liking to Wubbzy and Daizy in the same way he takes a liking to Mowgli.
- The FT Squad will meet Mowgli, Baloo, Bagheera and everyone else in this movie again in the season 2 sequel The FT Squad's Adventures in The Jungle Book 2.